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;; Definition of GSLL system 
;; Liam Healy
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;; Time-stamp: <2009-08-26 21:26:40EDT gsll.asd>
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(when (asdf:find-system :fsbv nil)
  (pushnew :fsbv *features*))

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(eval-when (:compile-toplevel :load-toplevel :execute)
  (asdf:oos 'asdf:load-op :cffi-grovel))

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(asdf:defsystem "gsll"
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  :name "gsll"
  :description "GNU Scientific Library for Lisp."
  :version "0"
  :author "Liam M. Healy"
  :licence "LLGPL v3, FDL"
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  :depends-on (cffi cffi-grovel trivial-garbage cl-utilities #+fsbv fsbv)
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  :components
  ((:module init
	    :components
	    ((:file "init")
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	     (cffi-grovel:grovel-file "libgsl" :pathname #+unix "libgsl-unix")
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	     (:file "utility")
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	     (:file "forms")
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	     (:file "conditions" :depends-on ("init" "libgsl"))
	     (:file "number-conversion" :depends-on ("init" "libgsl"))
	     (:file "callback-compile-defs" :depends-on ("init"))
	     (:file "mobject" :depends-on ("init" "callback-compile-defs"))
	     (:file "callback-included" :depends-on ("mobject"))
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	     (:file "callback"
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		    :depends-on
		    ("init" "utility" "forms" "number-conversion"
			    "callback-included"))
	     (:file "types" :depends-on ("init" "libgsl"))
	     (cffi-grovel:grovel-file "callback-struct"
				      :depends-on ("types" "libgsl"))
	     (:file "funcallable" :depends-on ("utility"))
	     (:file "complex-types" :depends-on ("types"))
	     (:file "element-types" :depends-on ("init" "complex-types"))
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	     (:file "interface"
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		    :depends-on ("init" "conditions" "element-types"
					"number-conversion"))
	     (:file "defmfun"
		    :depends-on ("init" "forms" "element-types" "interface"))
	     (:file "defmfun-array"
		    :depends-on ("defmfun" "callback-included"))
	     (:file "defmfun-single"
		    :depends-on ("defmfun" "mobject" "callback"))
	     (:file "body-expand" :depends-on ("defmfun" "mobject" "callback"))
	     (:file "generate-examples" :depends-on ("init"))))
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   (:module floating-point
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	    :depends-on (init)
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	    :components
	    ((:file "ieee-modes")
	     (:file "floating-point")))
   (:module mathematical
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	    :depends-on (init)
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	    :components
	    ((:file "mathematical")
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	     #+fsbv
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	     (:file "complex")))
   (:module data
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	    :depends-on (init)
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	    :components
	    ((:file "foreign-friendly")
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	     (:file "foreign-array" :depends-on ("foreign-friendly"))
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	     (cffi-grovel:grovel-file "array-structs")
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	     (:file "marray" :depends-on ("foreign-array" "array-structs"))
	     (:file "vector" :depends-on ("marray" "array-structs"))
	     (:file "matrix" :depends-on ("marray" "vector" "array-structs"))
	     (:file "maref" :depends-on ("marray" "vector" "matrix"))
	     (:file "both" :depends-on ("marray" "vector" "matrix"))
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	     (:file "copy-cl")
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	     (:file "array-tests" :depends-on ("both"))
	     (:file "permutation" :depends-on ("marray" "array-structs"))
	     (:file "combination" :depends-on ("marray" "array-structs"))))
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   (:file "polynomial" :depends-on (init data))
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   (:module special-functions
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	    :depends-on (init)
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	    :components
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	    ((cffi-grovel:grovel-file "sf-result")
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	     (:file "return-structures" :depends-on ("sf-result"))
	     (:file "airy" :depends-on ("return-structures"))
	     (:file "bessel" :depends-on ("return-structures"))
	     (:file "clausen" :depends-on ("return-structures"))
	     (:file "coulomb" :depends-on ("return-structures"))
	     (:file "coupling" :depends-on ("return-structures"))
	     (:file "dawson" :depends-on ("return-structures"))
	     (:file "debye" :depends-on ("return-structures"))
	     (:file "dilogarithm" :depends-on ("return-structures"))
	     (:file "elementary" :depends-on ("return-structures"))
	     (:file "elliptic-integrals" :depends-on ("return-structures"))
	     (:file "elliptic-functions" :depends-on ("return-structures"))
	     (:file "error-functions" :depends-on ("return-structures"))
	     (:file "exponential-functions" :depends-on ("return-structures"))
	     (:file "exponential-integrals" :depends-on ("return-structures"))
	     (:file "fermi-dirac" :depends-on ("return-structures"))
	     (:file "gamma" :depends-on ("return-structures"))
	     (:file "gegenbauer" :depends-on ("return-structures"))
	     (:file "hypergeometric" :depends-on ("return-structures"))
	     (:file "laguerre" :depends-on ("return-structures"))
	     (:file "lambert" :depends-on ("return-structures"))
	     (:file "legendre" :depends-on ("return-structures"))
	     (:file "logarithm" :depends-on ("return-structures"))
	     (:file "mathieu" :depends-on ("return-structures"))
	     (:file "power" :depends-on ("return-structures"))
	     (:file "psi" :depends-on ("return-structures"))
	     (:file "synchrotron" :depends-on ("return-structures"))
	     (:file "transport" :depends-on ("return-structures"))
	     (:file "trigonometry" :depends-on ("return-structures"))
	     (:file "zeta" :depends-on ("return-structures"))))
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   (:file "sorting" :depends-on (init data))
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   (:module linear-algebra
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	    :depends-on (init data special-functions)
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	    :components
	    ((:file "blas1")
	     (:file "blas2")
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	     (:file "blas3" :depends-on ("blas2"))
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	     (:file "exponential")
	     (:file "lu")
	     (:file "qr")
	     (:file "qrpt")
	     (:file "svd")
	     (:file "cholesky")
	     (:file "diagonal")
	     (:file "householder")))
   (:module eigensystems
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	    :depends-on (init data)
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	    :components
	    ((:file "symmetric-hermitian")
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	     (cffi-grovel:grovel-file "eigen-struct")
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	     (:file "nonsymmetric" :depends-on ("eigen-struct"))
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	     (:file "generalized")
	     (:file "nonsymmetric-generalized")))
   ;; Skip fft for now, I'm not sure how it works in C
   (:module random
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	    :depends-on (init data)
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	    :components
	    ((:file "rng-types")
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	     (:file "generators" :depends-on ("rng-types"))
	     (:file "quasi" :depends-on ("rng-types" "generators"))
	     (:file "gaussian" :depends-on ("rng-types"))
	     (:file "gaussian-tail" :depends-on ("rng-types"))
	     (:file "gaussian-bivariate" :depends-on ("rng-types"))
	     (:file "exponential" :depends-on ("rng-types"))
	     (:file "laplace" :depends-on ("rng-types"))
	     (:file "exponential-power" :depends-on ("rng-types"))
	     (:file "cauchy" :depends-on ("rng-types"))
	     (:file "rayleigh" :depends-on ("rng-types"))
	     (:file "rayleigh-tail" :depends-on ("rng-types"))
	     (:file "landau" :depends-on ("rng-types"))
	     (:file "levy" :depends-on ("rng-types"))
	     (:file "gamma" :depends-on ("rng-types"))
	     (:file "flat" :depends-on ("rng-types"))
	     (:file "lognormal" :depends-on ("rng-types"))
	     (:file "chi-squared" :depends-on ("rng-types"))
	     (:file "fdist" :depends-on ("rng-types"))
	     (:file "tdist" :depends-on ("rng-types"))
	     (:file "beta" :depends-on ("rng-types"))
	     (:file "logistic" :depends-on ("rng-types"))
	     (:file "pareto" :depends-on ("rng-types"))
	     (:file "spherical-vector" :depends-on ("rng-types"))
	     (:file "weibull" :depends-on ("rng-types"))
	     (:file "gumbel1" :depends-on ("rng-types"))
	     (:file "gumbel2" :depends-on ("rng-types"))
	     (:file "dirichlet" :depends-on ("rng-types"))
	     (:file "discrete" :depends-on ("rng-types"))
	     (:file "poisson" :depends-on ("rng-types"))
	     (:file "bernoulli" :depends-on ("rng-types"))
	     (:file "binomial" :depends-on ("rng-types"))
	     (:file "multinomial" :depends-on ("rng-types"))
	     (:file "negative-binomial" :depends-on ("rng-types"))
	     (:file "geometric" :depends-on ("rng-types"))
	     (:file "hypergeometric" :depends-on ("rng-types"))
	     (:file "logarithmic" :depends-on ("rng-types"))
	     (:file "shuffling-sampling" :depends-on ("rng-types"))))
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   (:module statistics
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	    :depends-on (init data)
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	    :components
	    ((:file "mean-variance")
	     (:file "absolute-deviation")
	     (:file "higher-moments")
	     (:file "autocorrelation")
	     (:file "covariance")
	     ;; minimum and maximum values provided in vector.lisp
	     (:file "median-percentile")))
   (:module histogram
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	    :depends-on (init linear-algebra random)
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	    :components
	    ((:file "histogram")
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	     (:file "updating-accessing" :depends-on ("histogram"))
	     (:file "statistics" :depends-on ("histogram"))
	     (:file "operations" :depends-on ("histogram"))
	     (:file "probability-distribution" :depends-on ("histogram"))
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	     (:file "ntuple")))
   (:module calculus
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	    :depends-on (init data random)
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	    :components
	    ((:file "numerical-integration")
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	     (:file "numerical-integration-with-tables"
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		    :depends-on ("numerical-integration"))
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	     (cffi-grovel:grovel-file "monte-carlo-structs")
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	     (:file "monte-carlo")
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	     (:file "numerical-differentiation")))
   (:module ordinary-differential-equations
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	    :depends-on (init)
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	    :components
	    ((:file "ode-system")
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	     (cffi-grovel:grovel-file "ode-struct")
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	     (:file "stepping" :depends-on ("ode-struct"))
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	     (:file "control")
	     (:file "evolution")
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	     (:file "ode-example" :depends-on ("ode-system" "stepping"))))
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   (:module interpolation
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	    :depends-on (init)
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	    :components
	    ((:file "interpolation")
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	     (:file "types" :depends-on ("interpolation"))
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	     (:file "lookup")
	     (:file "evaluation")
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	     (:file "spline-example" :depends-on ("types"))))
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   (:file "chebyshev" :depends-on (init))
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   (cffi-grovel:grovel-file "series-struct")
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   (:file "series-acceleration" :depends-on (init "series-struct"))
   (:file "wavelet" :depends-on (init data))
   (:file "hankel" :depends-on (init data))
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   (:module solve-minimize-fit
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	    :depends-on (init data random)
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	    :components
	    ((:file "generic")
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	     (cffi-grovel:grovel-file "solver-struct")
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	     (:file "roots-one" :depends-on ("generic"))
	     (:file "minimization-one" :depends-on ("generic"))
	     (:file "roots-multi" :depends-on ("roots-one" "generic" "solver-struct"))
	     (:file "minimization-multi" :depends-on ("generic"))
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	     (:file "linear-least-squares")
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	     (:file "nonlinear-least-squares"
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		    :depends-on ("generic" "solver-struct"))
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	     #+fsbv
	     (:file "simulated-annealing")))
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   (:file "basis-splines" :depends-on (init data random))
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   (:module physical-constants
	    :components
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	    ((cffi-grovel:grovel-file "mksa")
	     (cffi-grovel:grovel-file "cgsm")
	     (:file export)))))
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#+asdf-system-connections 
(asdf:defsystem-connection gsll-iterate-extension
    :requires (gsll iterate)
    :components ((:module
		  "gsll-iterate"
		  :pathname "data/"
		  :components ((:file "iterate")))))