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;; Definition of GSLL system 
;; Liam Healy
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;; Time-stamp: <2009-03-29 12:54:31EDT gsll.asd>
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;; $Id$
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(asdf:defsystem "gsll"
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    :name "gsll"
    :description "GNU Scientific Library for Lisp."
    :version "0"
    :author "Liam M. Healy"
    :licence "LLGPL v3, FDL"
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    :depends-on (cffi trivial-garbage cl-utilities)
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    :components
    ((:module init
	      :components
	      ((:file "init")
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	       (:file "forms")
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	       (:file "conditions" :depends-on (init))
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	       (:file "number-conversion" :depends-on (init))
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	       (:file "callback-compile-defs" :depends-on (init))
	       (:file "mobject" :depends-on (init callback-compile-defs))
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	       (:file "callback-included" :depends-on (mobject))
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	       (:file "callback" :depends-on (init forms number-conversion callback-included))
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	       (:file "funcallable")
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	       (:file "types" :depends-on (init))
	       (:file "complex-types" :depends-on (types))
	       (:file "element-types" :depends-on (init complex-types))
	       (:file "interface"
		      :depends-on (init conditions element-types number-conversion))
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	       (:file "defmfun" :depends-on (init forms element-types interface))
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	       (:file "defmfun-array" :depends-on (defmfun callback-included))
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	       (:file "defmfun-single" :depends-on (defmfun mobject callback))
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	       (:file "generate-examples" :depends-on (init))))
     (:module floating-point
	      :depends-on (init)
	      :components
	      ((:file "ieee-modes")
	       (:file "floating-point")))
     (:module mathematical
	      :depends-on (init)
	      :components
	      ((:file "mathematical")
	       (:file "complex")))
     (:module data
	      :depends-on (init)
	      :components
	      ((:file "foreign-friendly")
	       (:file "foreign-array" :depends-on (foreign-friendly))
	       (:file "marray" :depends-on (foreign-array))
	       (:file "vector" :depends-on (marray))
	       (:file "matrix" :depends-on (marray vector))
	       (:file "maref" :depends-on (marray vector matrix))
	       (:file "both" :depends-on (marray vector matrix))
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	       (:file "copy-cl")
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	       (:file "array-tests" :depends-on (both))
	       (:file "permutation" :depends-on (marray))
	       (:file "combination" :depends-on (marray))))
     (:file "polynomial" :depends-on (init data))
     (:module special-functions
	      :depends-on (init)
	      :components
	      ((:file "return-structures")
	       (:file "airy" :depends-on (return-structures))
	       (:file "bessel" :depends-on (return-structures))
	       (:file "clausen" :depends-on (return-structures))
	       (:file "coulomb" :depends-on (return-structures))
	       (:file "coupling" :depends-on (return-structures))
	       (:file "dawson" :depends-on (return-structures))
	       (:file "debye" :depends-on (return-structures))
	       (:file "dilogarithm" :depends-on (return-structures))
	       (:file "elementary" :depends-on (return-structures))
	       (:file "elliptic-integrals" :depends-on (return-structures))
	       (:file "elliptic-functions" :depends-on (return-structures))
	       (:file "error-functions" :depends-on (return-structures))
	       (:file "exponential-functions" :depends-on (return-structures))
	       (:file "exponential-integrals" :depends-on (return-structures))
	       (:file "fermi-dirac" :depends-on (return-structures))
	       (:file "gamma" :depends-on (return-structures))
	       (:file "gegenbauer" :depends-on (return-structures))
	       (:file "hypergeometric" :depends-on (return-structures))
	       (:file "laguerre" :depends-on (return-structures))
	       (:file "lambert" :depends-on (return-structures))
	       (:file "legendre" :depends-on (return-structures))
	       (:file "logarithm" :depends-on (return-structures))
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	       (:file "mathieu" :depends-on (return-structures))
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	       (:file "power" :depends-on (return-structures))
	       (:file "psi" :depends-on (return-structures))
	       (:file "synchrotron" :depends-on (return-structures))
	       (:file "transport" :depends-on (return-structures))
	       (:file "trigonometry" :depends-on (return-structures))
	       (:file "zeta" :depends-on (return-structures))))
     (:file "sorting" :depends-on (init data))
     (:module linear-algebra
	      :depends-on (init data special-functions)
	      :components
	      ((:file "blas1")
	       (:file "blas2")
	       (:file "blas3" :depends-on (blas2))
	       (:file "exponential")
	       (:file "lu")
	       (:file "qr")
	       (:file "qrpt")
	       (:file "svd")
	       (:file "cholesky")
	       (:file "diagonal")
	       (:file "householder")))
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     (:module eigensystems
	      :depends-on (init data)
	      :components
	      ((:file "symmetric-hermitian")
	       (:file "nonsymmetric")
	       (:file "generalized")
	       (:file "nonsymmetric-generalized")))
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     ;; Skip fft for now, I'm not sure how it works in C
     (:module random
	      :depends-on (init data)
	      :components
	      ((:file "rng-types")
	       (:file "generators" :depends-on (rng-types))
	       (:file "quasi" :depends-on (rng-types generators))
	       (:file "gaussian" :depends-on (rng-types))
	       (:file "gaussian-tail" :depends-on (rng-types))
	       (:file "gaussian-bivariate" :depends-on (rng-types))
	       (:file "exponential" :depends-on (rng-types))
	       (:file "laplace" :depends-on (rng-types))
	       (:file "exponential-power" :depends-on (rng-types))
	       (:file "cauchy" :depends-on (rng-types))
	       (:file "rayleigh" :depends-on (rng-types))
	       (:file "rayleigh-tail" :depends-on (rng-types))
	       (:file "landau" :depends-on (rng-types))
	       (:file "levy" :depends-on (rng-types))
	       (:file "gamma" :depends-on (rng-types))
	       (:file "flat" :depends-on (rng-types))
	       (:file "lognormal" :depends-on (rng-types))
	       (:file "chi-squared" :depends-on (rng-types))
	       (:file "fdist" :depends-on (rng-types))
	       (:file "tdist" :depends-on (rng-types))
	       (:file "beta" :depends-on (rng-types))
	       (:file "logistic" :depends-on (rng-types))
	       (:file "pareto" :depends-on (rng-types))
	       (:file "spherical-vector" :depends-on (rng-types))
	       (:file "weibull" :depends-on (rng-types))
	       (:file "gumbel1" :depends-on (rng-types))
	       (:file "gumbel2" :depends-on (rng-types))
	       (:file "dirichlet" :depends-on (rng-types))
	       (:file "discrete" :depends-on (rng-types))
	       (:file "poisson" :depends-on (rng-types))
	       (:file "bernoulli" :depends-on (rng-types))
	       (:file "binomial" :depends-on (rng-types))
	       (:file "multinomial" :depends-on (rng-types))
	       (:file "negative-binomial" :depends-on (rng-types))
	       (:file "geometric" :depends-on (rng-types))
	       (:file "hypergeometric" :depends-on (rng-types))
	       (:file "logarithmic" :depends-on (rng-types))
	       (:file "shuffling-sampling" :depends-on (rng-types))))
     (:module statistics
	      :depends-on (init data)
	      :components
	      ((:file "mean-variance")
	       (:file "absolute-deviation")
	       (:file "higher-moments")
	       (:file "autocorrelation")
	       (:file "covariance")
	       ;; minimum and maximum values provided in vector.lisp
	       (:file "median-percentile")))
     (:module histogram
	      :depends-on (init linear-algebra)
	      :components
	      ((:file "histogram")
	       (:file "updating-accessing" :depends-on (histogram))
	       (:file "statistics" :depends-on (histogram))
	       (:file "operations" :depends-on (histogram))
	       (:file "probability-distribution" :depends-on (histogram))
	       (:file "ntuple")))
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     #+(or)
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     (:module calculus
	      :depends-on (init data random)
	      :components
	      ((:file "numerical-integration")
	       (:file "monte-carlo")
	       (:file "numerical-differentiation")))
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     #+(or)
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     (:module ordinary-differential-equations
	      :depends-on (init)
	      :components
	      ((:file "ode-system")
	       (:file "stepping")
	       (:file "control")
	       (:file "evolution")
	       (:file "ode-example" :depends-on (ode-system stepping))))
     (:module interpolation
	      :depends-on (init)
	      :components
	      ((:file "interpolation")
	       (:file "types" :depends-on (interpolation))
	       (:file "lookup")
	       (:file "evaluation")
	       (:file "spline-example" :depends-on (types))))
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     (:file "chebyshev" :depends-on (init))
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     (:file "series-acceleration" :depends-on (init))
     (:file "wavelet" :depends-on (init data))
     (:file "hankel" :depends-on (init data))
     (:module solve-minimize-fit
	      :depends-on (init data random)
	      :components
	      ((:file "generic")
	       (:file "roots-one" :depends-on (generic))
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	       (:file "minimization-one" :depends-on (generic))
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	       (:file "roots-multi" :depends-on (roots-one generic))
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	       (:file "minimization-multi" :depends-on (generic))
	       (:file "linear-least-squares")
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	       (:file "nonlinear-least-squares" :depends-on (generic))))
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     (:file "basis-splines" :depends-on (init data random))))