Fix bundle-op and concatenate-source-op file order
Fix direct-dependencies, that was reversed from file order, leading to inversions in the order of input files for bundle-op and concatenate-source-op as compared to what a user would expect. Check all the bootstrap file lists and provide an *actionable* error message when discrepancies are detected. Also fix bundle's use of required-components to be in line with an old comment. And remove the comment.
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