Fix bug detecting change in read files.
Files read in by READ-FILE-LINE or READ-FILE-FORM were not being tracked. With this change, they are noticed and added to ADDITIONAL-INPUT-FILES for a component and operation. Adding this tracking led to introduction of a new dependency in asdf.asd. Also, added a comparison between the operation-time and the latest update time for the input files of a component and operation. Previously, even if the input files were newer than the last operation time, if there were no output files, ASDF would incorrectly think the operation was up-to-date.
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